Design, standardization and implementation of a new technique in Guatemala, for the rapid diagnosis of positive blood cultures, using Maldi-tof technology

Authors

  • Juan C. Barrera-Toledo Hospital San Juan de Dios y Facultad de Medicina de la Universidad de San Carlos de Guatemala
  • Sergio Melgar Facultad de Ciencias Médicas, Universidad de San Carlos de Guatemala
  • Edith Oregon Centro Universitario de Ciencias de la Salud, Universidad de Guadalajara

DOI:

https://doi.org/10.36829/63CTS.v8i1.905

Abstract

Infectious diseases are a health problem that despite medical advances in terms of diagnosis continue to take lives worldwide, such is the case of sepsis. The purpose of this research was to design, standardize and implement a non-existent protocol in Guatemala, for the routine diagnosis of positive blood cultures, within the facilities of the clinical laboratory of the San Juan de Dios General Hospital; where the only Maldi-tof (Matrix Assisted Laser Desorption Ionization-Time of flight-mass spectrometry) type mass spectrometer is located. For this, 240 samples of positive blood cultures were used, coming from patients of the different services. The microbiological diagnosis was made by comparing the identification data obtained from pure microbiological cultures and direct samples of BHI broth (Brain Heart Infusion) bottles. The results of the two methodologies were evaluated based on “paired or matched in groups” statistical design. The Maldi-tof technique did not show disagreement regarding identification between the two types of samples, but it did in the response time. The time reduction was 42.9 h for Gram-positive bacteria, 45.0 h for Gram-negative, and 126.2 h for yeasts, supporting identification from direct samples. This research aims to provide a new diagnostic alternative that will allow access to fast, reliable, and accurate results for the Guatemalan population. It will also help to reduce e morbidity and mortality rates of patients with sepsis, to promote hospital supplies savings, decrease the patient length of stay, save unnecessary antibiotics, and indirectly contribute to combating antimicrobial resistance; a critical problem faced by the world today.

Downloads

Download data is not yet available.

Author Biography

Juan C. Barrera-Toledo, Hospital San Juan de Dios y Facultad de Medicina de la Universidad de San Carlos de Guatemala

Quimico Biólogo

Maestría en Microbiología de Enfermedades Infecciosas

Estudiante de Doctorado en Ciencias Biomédicas

Supervisor de Laboratorio Clinico del Hospital General San Juan de Dios. 

References

Aebersold, R., & Mann, M. (2003). Mass spectrometry-based proteomics. Nature, 422(6928), 198-207. https:// doi:10.1038/nature01511

Angeletti, S., Dicuonzo, G., D'Agostino, A., Avola, A., Crea, F., Palazzo, C., Dedej, E. & Florio, L.D. (2015). Turnaround time of positive blood cultures after the introduction of matrix-assisted laser desorption-ionization time-of-flight mass spectrometry. New Microbiological, 38(3), 379-386.

Angeletti, S. (2017). Matrix assisted laser desorption time of flight mass spectrometry (Maldi-tof MS) in clinical microbiology. Journal of Microbiological Methods, 138, 20–29. https://doi:10.1016/j.mimet.2016.09.003

Bright, J. J., Claydon, M. A., Soufian, M., & Gordon, D. B. (2002). Rapid typing of bacteria using matrix-assisted laser desorption ionisation time-of-flight mass spectrometry and pattern recognition software. Journal of Microbiological Methods, 48(2-3), 127–138. https://doi:10.1016/s0167-7012(01)00317-7

Cattani, M. E., Posse, T., Hermes, R. L., & Kaufman, S. C. (2015). Identificación rápida de microorganismos de frascos de hemocultivos por espectrometría de masas. Comparación de dos procedimientos diagnósticos. Revista Argentina de Microbiología, 47(3), 190–195. https:// doi:10.1016/j.ram.2015.06.001

Cherkaoui, A., Hibbs, J., Emonet, S., Tangomo, M., Girard, M., Francois, P., & Schrenzel, J. (2010). Comparison of two matrix assisted laser desorption ionization time of flight mass spectrometry methods with conventional phenotypic identification for routine identification of bacteria to the species level. Journal of Clinical Microbiology, 48, 1169-1175 . https://doi:10.1128/jcm.01881-09

Claydon, M. A., Davey, S. N., Edwards-Jones, V., & Gordon, D. B. (1996). The rapid identification of intact microorganisms using mass spectrometry. Nature Biotechnology, 14(11), 1584–1586. https://doi:10.1038/nbt1196-1584

Clark, A. E., Kaleta, E. J., Arora, A., & Wolk, D. M. (2013). Matrix-assisted laser desorption ionization-time of flight mass spectrometry: a fundamental shift in the routine practice of clinical microbiology. Clinical Microbiology Reviews, 26(3), 547–603. https://doi:10.1128/cmr.00072-12

De la Pedrosa, E. G. G., Gimeno, C., Soriano, A., & Cantón, R. (2016). Estudios de coste-efectividad con Maldi-tof e impacto clínico. Enfermedades Infecciosas y Microbiología Clínica, 34, 47–52. https://doi:10.1016/s0213-005x(16)30191-4

Drevinek, M., Dresler, J., Klimentova, J., Pisa, L., & Hubalek, M. (2012). Evaluation of sample preparation methods for Maldi-tof MS identification of highly dangerous bacteria. Letters in Applied Microbiology, 55(1), 40–46. https://doi:10.1111/j.1472-765x.2012.03255.x

Dupont, C., Sivadon-Tardy, V., Bille, E., Dauphin, B., Beretti, J. L., Alvarez, A. S., … Carbonnelle, E. (2010). Identification of clinical coagulase-negative staphylococci, isolated in microbiology laboratories, by matrix-assisted laser desorption/ionization-time of flight mass spectrometry and two automated systems. Clinical Microbiology and Infection, 16(7), 998–1004. https://doi:10.1111/j.1469-0691.2009.03036.x

Emonet, S., Shah, H. N., Cherkaoui, A., & Schrenzel, J. (2010). Application and use of various mass spectrometry methods in clinical microbiology. Clinical Microbiology and Infection, 16(11), 1604–1613. doi:10.1111/j.1469-0691.2010.03368.x

Fernández, A., García C., Saéz, N., & Valdezate, S. (2013). Métodos de identificación bacteriana en el laboratorio de microbiología. Procedimientos en Microbiología Clínica. Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica, recuperado de: http://www.seimc.org/documentos/protocolos/microbiologia/

Ferreira, L., Sánchez-Juanes, F., Porras-Guerra, I., García-García, M. I., García-Sánchez, J. E., González-Buitrago, J. M., & Muñoz-Bellido, J. L. (2011). Microorganisms direct identification from blood culture by Matrix Assisted Laser Desorption Ionization Time of Flight Mass Spectrometry. Clinical Microbiology and Infection, 17(4), 546–551. https://doi:10.1111/j.1469-0691.2010.03257.x

Ferreira, L., Sanchez-Juanes, F., Gonzalez-Avila, M., Cembrero-Fucinos, D., Herrero-Hernandez, A., Gonzalez-Buitrago, J. M., & Munoz-Bellido, J. L. (2010). Direct Identification of Urinary Tract Pathogens from Urine Samples by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. Journal of Clinical Microbiology, 48(6), 2110–2115. https://doi:10.1128/jcm.02215-09

Galán, F., García-Agudo, L., Guerrero, I., Marín, P., García-Tapia, A., García-Martos, P., & Rodríguez-Iglesias, M. (2015). Evaluación de la espectrometría de masas en la identificación de levaduras de interés clínico. Clinical Microbiology and Infection, 33(6), 372–378. https://doi:10.1016/j.eimc.2014.10.003

García, P., Allende, F., Legarraga, P., Huilcaman, M., & Solari, S. (2012). Identificación bacteriana basada en el espectro de masas de proteínas: Una nueva mirada a la microbiología del siglo XXI. Revista Chilena de Infectología, 29(3), 263–272. https://doi:10.4067/s0716-10182012000300003

Gherardi, G., Angeletti, S., Panitti, M., Pompilio, A., Di Bonaventura, G., Crea, F., … Dicuonzo, G. (2012). Comparative evaluation of the Vitek-2 Compact and Phoenix systems for rapid identification and antibiotic susceptibility testing directly from blood cultures of Gram-negative and Gram-positive isolates. Diagnostic Microbiology and Infectious Disease, 72(1), 20–31. https://doi:10.1016/j.diagmicrobio.2011.09.015

Holland, R. D., Wilkes, J. G., Rafii, F., Sutherland, J. B., Persons, C. C., Voorhees, K. J., & Lay, Jr, J. O. (1996). Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 10(10), 1227–1232. https://doi:10.1002/(sici)1097-0231(19960731)10:10<1227::aid-rcm659>3.0.co;2-6

Hoyos-Mallecot, Y., Miranda-Casas, C., Cabrera-Alvargonzalez, J. J., Gómez-Camarasa, C., Pérez-Ramirez, M. D., & Navarro-Marí, J. M. (2013). Identificación bacteriana directamente del hemocultivo mediante una técnica rápida de espectrometría de masas. Enfermedades Infecciosas y Microbiología Clínica, 31(3), 152–155. https://doi:10.1016/j.eimc.2012.09.003

Kohlmann, R., Hoffmann, A., Geis, G., & Gatermann, S. (2015). Maldi-tof mass spectrometry following short incubation on a solid medium is a valuable tool for rapid pathogen identification from positive blood cultures. International Journal of Medical Microbiology, 305(4), 469–479. https://doi:10.1016/j.ijmm.2015.04.004

Kumate, J., Gutiérrez, G., Muñoz, O., Santos, I., Solórzano, F., & Miranda, G. (2016). Infectología Clínica. México D.F. Méndez Editores

Lewis, J. K., Wei, J., & Siuzdak, G. (2006). Matrix-assisted laser desorption / ionization mass spectrometry in peptide and protein analysis. Encyclopedia of Analytical Chemistry, 5880–5894. https://doi:10.1002/9780470027318.a1621

Luethy, P. M., & Johnson, J. K. (2018). The use of matrix assisted laser desorption ionization time of flight mass spectrometry for the identification of pathogens causing sepsis. Journal of Applied Laboratory Medicine. https://doi:10.1373/jalm.2018.027318

Mosko, M. J., Nakorchevsky, A. A., Flores, E., Metzler, H., Ehrich, M., Van, D. J., … Nygren, A. O. (2016). Ultrasensitive detection of multiplexed somatic mutations using mass spectrometry. Journal of Molecular Diagnostics, 18(1), 23–31. https://doi:10.1016/j.jmoldx.2015.08.001

Moura, H., Woolfitt, A. R., Carvalho, M. G., Pavlopoulos, A., Teixeira, L. M., Satten, G. A., & Barr, J. R. (2008). Maldi-tof mass spectrometry as a tool for differentiation of invasive and noninvasive streptococcus pyogenes isolates. Immunology & Medical Microbiology, 53(3), 333–342. https://doi:10.1111/j.1574-695x.2008.00428.x

Osthoff, M., Gürtler, N., Bassetti, S., Balestra, G., Marsch, S., Pargger, H., … Egli, A. (2017). Impact of maldi-tof MS based identification directly from positive blood cultures on patient management: a controlled clinical trial. Clinical Microbiology and Infection, 23(2), 78–85. https://doi:10.1016/j.cmi.2016.08.009

Singhal, N., Kumar, M., Kanaujia, P. K., & Virdi, J. S. (2015). Maldi-tof mass spectrometry: an emerging technology for microbial identification and diagnosis. Frontiers in Microbiology, 6. https://doi:10.3389/fmicb.2015.00791

Verroken, A., Defourny, L., le Polain de Waroux, O., Belkhir, L., Laterre, P.F., Delmée, M., & Glupczynski, Y. (2016). Clinical impact of Maldi-tof MS identification and rapid susceptibility testing on adequate antimicrobial treatment in sepsis with positive blood cultures. Plos One, 11(5). https:// doi:10.1371/journal.pone.0156299

Zabbe, J. B., Zanardo, L., Mégraud, F., & Bessède, E. (2015). Maldi-tof mass spectrometry for early identification of bacteria grown in blood culture bottles. Journal of Microbiological Methods, 115, 42–46. https://doi:10.1016/j.mimet.2015.04.009

Zárate, M. S., Romano, V., Nievas, J., & Smayevsky, J. (2014). Utilidad de la espectrometría de masas Maldi-tof en la identificación microbiana anaeróbica. Revista Argentina de Microbiología, 46(2), 98–102. https://doi:10.1016/S0325-7541(14)70055-0

Imagen de portada

Published

2021-06-30

How to Cite

Barrera-Toledo, J. C., Melgar, S., & Oregon, E. (2021). Design, standardization and implementation of a new technique in Guatemala, for the rapid diagnosis of positive blood cultures, using Maldi-tof technology. Ciencia, Tecnología Y Salud, 8(1), 93–103. https://doi.org/10.36829/63CTS.v8i1.905

Issue

Section

Artículos de revisión